GENWARE

Biothing's Kernel

Links – Algorithm Reference

Vectors
http://en.wikipedia.org/wiki/Euclidean_vector
http://www.shiffman.net/teaching/nature/vectors/

Steering Behaiviours
http://www.red3d.com/cwr/steer/
http://www.red3d.com/cwr/boids/
http://www.research.scea.com/research/pdfs/CWR2001_04_23_UCB.pdf
http://libcinder.org/docs/dev/hello_cinder.html

Stigmergy
http://en.wikipedia.org/wiki/Ant_colony_optimization
http://en.wikipedia.org/wiki/Stigmergy

Cellullar Automata
http://mathworld.wolfram.com/CellularAutomaton.html
http://www.bitstorm.org/gameoflife/
http://www.ibiblio.org/lifepatterns/
http://math.hws.edu/xJava/CA/EdgeOfChaosCA.html
http://mathworld.wolfram.com/ElementaryCellularAutomaton.html

Octree
http://en.wikipedia.org/wiki/Octree
http://www.flipcode.com/archives/Introduction_To_Octrees.shtml

QuadTree
http://en.wikipedia.org/wiki/Quadtree

Recursion / Fractals

DLA
http://formandcode.com/code-examples/dla
http://polymer.bu.edu/java/java/dla2/dlaapplet.html
http://local.wasp.uwa.edu.au/~pbourke/fractals/dla3d/

Reaction Diffusion
http://en.wikipedia.org/wiki/Reaction%E2%80%93diffusion_system
http://cgjennings.ca/toybox/turingmorph/
http://www.joakimlinde.se/java/ReactionDiffusion/
http://barrybecker4.com/applet_index_en.html

Magnetic dipoles

L-system
http://www.biologie.uni-hamburg.de/b-online/e28_3/lsys.html
http://en.wikipedia.org/wiki/L-systems
http://www.shiffman.net/teaching/a2z/generative/#lsystem

Voronoi / Delaunay
http://mathworld.wolfram.com/VoronoiDiagram.html
http://en.wikipedia.org/wiki/Voronoi_diagram

PathFinding – A*
Genetic Algorithm
Neural Networks

Antiobjects – Collaborative Diffusion
http://scalablegamedesign.cs.colorado.edu/wiki/Collaborative_Diffusion
http://geeklair.net/~pratzsch/blog/2008/04/antiobjects.html
http://en.wikipedia.org/wiki/Antiobjects

Fluid dynamics – liquid simulation
http://www.dgp.toronto.edu/people/stam/reality/Research/pdf/GDC03.pdf
http://physbam.stanford.edu/~fedkiw/papers/stanford2001-02.pdf

Flow on surface or arbitrary Topology
http://www.dgp.toronto.edu/people/stam/reality/Research/pdf/surfflow.pdf